Commit
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76fe695
1
Parent(s):
64541c9
fix
Browse files
multi_omics_transcript_expression.py
CHANGED
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@@ -264,6 +264,8 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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"chromosome": datasets.Value(dtype="string"),
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"RNA": datasets.Value("string"),
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"Protein": datasets.Value("string"),
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}
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)
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return datasets.DatasetInfo(
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@@ -318,6 +320,8 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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)
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if padded_sequence:
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yield key, {
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"labels_name": labels_name,
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"labels": labels_row.to_numpy(),
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"DNA": standardize_sequence(padded_sequence),
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"chromosome": datasets.Value(dtype="string"),
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"RNA": datasets.Value("string"),
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"Protein": datasets.Value("string"),
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+
"transcript_id": datasets.Value("string"),
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"gene_id": datasets.Value("string"),
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}
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)
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return datasets.DatasetInfo(
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)
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if padded_sequence:
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yield key, {
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+
"transcript_id":coordinates_row["transcript_id_gtex"],
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"gene_id":coordinates_row["gene_id_gtex"],
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"labels_name": labels_name,
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"labels": labels_row.to_numpy(),
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"DNA": standardize_sequence(padded_sequence),
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