fix

multi_omics_transcript_expression.py

@@ -323,10 +323,26 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
 
         norm_values_df = pd.read_csv(self.normalization_values_csv_file)
         print(norm_values_df.columns)
-        m_t = norm_values_df[[f"m_t_{tissue}" for tissue in LABELS_V1]].to_numpy()
-        sigma_t = norm_values_df[[f"sigma_t_{tissue}" for tissue in LABELS_V1]].to_numpy()
-        m_g = norm_values_df[[f"m_g_{tissue}" for tissue in LABELS_V1]].to_numpy()
-        sigma_g = norm_values_df[[f"sigma_g_{tissue}" for tissue in LABELS_V1]].to_numpy()
+        m_t = (
+            norm_values_df[[f"m_t_{tissue}" for tissue in LABELS_V1]]
+            .to_numpy()
+            .reshape(-1)
+        )
+        sigma_t = (
+            norm_values_df[[f"sigma_t_{tissue}" for tissue in LABELS_V1]]
+            .to_numpy()
+            .reshape(-1)
+        )
+        m_g = (
+            norm_values_df[[f"m_g_{tissue}" for tissue in LABELS_V1]]
+            .to_numpy()
+            .reshape(-1)
+        )
+        sigma_g = (
+            norm_values_df[[f"sigma_g_{tissue}" for tissue in LABELS_V1]]
+            .to_numpy()
+            .reshape(-1)
+        )
 
         key = 0
         for idx, coordinates_row in split_df.iterrows():