Update requirements.txt

requirements.txt

@@ -1,8 +1,48 @@
+# --- Core demo UI ---
 gradio
 pillow
+
+# --- Scientific / image processing ---
 numpy
+scipy
+matplotlib
 scikit-image
+opencv-python-headless
+tifffile
+
+# --- Machine learning / deep learning ---
 torch
 torchvision
-plantcv
-opencv-python-headless
+timm              # for pretrained backbones
+segmentation-models-pytorch
+ultralytics       # YOLO models (if you extend later)
+
+# --- Plant phenotyping ---
+plantcv==4.6
+
+# --- Data handling & utils ---
+pandas
+tqdm
+pyyaml
+joblib
+
+# --- Geometry / remote sensing ---
+shapely
+rasterio
+fiona
+
+# --- For morphology / texture analysis ---
+scikit-learn
+seaborn
+networkx
+skan              # skeleton analysis
+
+# --- For model configs & logging ---
+omegaconf
+hydra-core
+loguru
+
+# --- Optional: segmentation research tools ---
+# (comment these out if not needed to reduce build time)
+segment-anything
+git+https://github.com/facebookresearch/segment-anything-2.git@2b90b9f5ceec907a1c18123530e92e794ad901a4