add more functions

app.py

@@ -436,6 +436,9 @@ def process_input(smiles_input=None, file_obj=None, show_linear=False):
     return "No input provided.", None, None
 
 # Create Gradio interface
+# [Previous imports and functions remain the same]
+
+# Create Gradio interface with fixed examples
 iface = gr.Interface(
     fn=process_input,
     inputs=[
@@ -446,12 +449,10 @@ iface = gr.Interface(
         ),
         gr.File(
             label="Or upload a text file with SMILES",
-            file_types=[".txt"],
-            type="binary"
+            file_types=[".txt"]
         ),
         gr.Checkbox(
-            label="Show linear representation",
-            value=False
+            label="Show linear representation"
         )
     ],
     outputs=[
@@ -460,13 +461,10 @@ iface = gr.Interface(
             lines=10
         ),
         gr.Image(
-            label="2D Structure with Annotations",
-            type="pil"
+            label="2D Structure with Annotations"
         ),
         gr.Image(
-            label="Linear Representation",
-            type="pil",
-            visible=lambda x: x  # Only show when checkbox is checked
+            label="Linear Representation"
         )
     ],
     title="Peptide Structure Analyzer and Visualizer",
@@ -481,12 +479,18 @@ iface = gr.Interface(
     Input: Either enter a SMILES string directly or upload a text file
     """,
     examples=[
-        # Example cyclic peptide with Proline
-        ["CC(C)C[C@@H]1NC(=O)[C@@H]2CCCN2C(=O)[C@@H](CC(C)C)NC(=O)[C@@H](CC(C)C)N(C)C(=O)[C@H](C)NC(=O)[C@H](Cc2ccccc2)NC1=O", None, True],
-        # Example cyclic peptide with ester bond
-        ["CC(C)C[C@@H]1OC(=O)[C@H](C)NC(=O)[C@H](C(C)C)OC(=O)[C@H](C)N(C)C(=O)[C@@H](C)NC(=O)[C@@H](Cc2ccccc2)N(C)C1=O", None, True]
+        [  # Example 1
+            "CC(C)C[C@@H]1NC(=O)[C@@H]2CCCN2C(=O)[C@@H](CC(C)C)NC(=O)[C@@H](CC(C)C)N(C)C(=O)[C@H](C)NC(=O)[C@H](Cc2ccccc2)NC1=O",
+            None,
+            True
+        ],
+        [  # Example 2
+            "CC(C)C[C@@H]1OC(=O)[C@H](C)NC(=O)[C@H](C(C)C)OC(=O)[C@H](C)N(C)C(=O)[C@@H](C)NC(=O)[C@@H](Cc2ccccc2)N(C)C1=O",
+            None,
+            True
+        ]
     ],
-    allow_flagging="never"
+    flagging_mode="never"
 )
 # Launch the app
 if __name__ == "__main__":