Update src/bin/binding_affinity_estimator.py

src/bin/binding_affinity_estimator.py

@@ -3,6 +3,12 @@ import multiprocessing
 import pandas as pd
 import numpy as np
 import scipy.stats
+import os
+import sys
+
+script_dir = os.path.dirname(os.path.abspath(__file__))
+sys.path.append('..')
+sys.path.append('.')
 
 from sklearn import linear_model
 from sklearn.model_selection import KFold
@@ -154,7 +160,8 @@ def predictAffinityWithModel(regressor_model,multiplied_vectors_df):
         validation_corr_pval_list,
     )
 
-ppi_affinity_file = "../data/auxilary_input/skempi_pipr/SKEMPI_all_dg_avg.txt"
+ppi_affinity_file_path = "../data/auxilary_input/skempi_pipr/SKEMPI_all_dg_avg.txt"
+ppi_affinity_file = os.path.join(script_dir, ppi_affinity_file_ath)
 ppi_affinity_df = pd.read_csv(ppi_affinity_file,sep="\t",header=None)
 ppi_affinity_df.columns = ['Protein1', 'Protein2', 'Affinity']