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removed unnecessary code snippet
Browse files- run_prothgt_app.py +0 -14
run_prothgt_app.py
CHANGED
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@@ -151,20 +151,6 @@ def generate_prediction_df(protein_ids, model_paths, model_config_paths, go_cate
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heterodata = torch.load(output)
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# Remove unnecessary edge types
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edge_types_to_remove = [
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('Protein', 'protein_function', 'GO_term_F'),
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('Protein', 'protein_function', 'GO_term_P'),
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('Protein', 'protein_function', 'GO_term_C'),
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('GO_term_F', 'rev_protein_function', 'Protein'),
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('GO_term_P', 'rev_protein_function', 'Protein'),
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('GO_term_C', 'rev_protein_function', 'Protein')
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]
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for edge_type in edge_types_to_remove:
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if edge_type in heterodata.edge_index_dict:
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del heterodata.edge_index_dict[edge_type]
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device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
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for go_cat, model_config_path, model_path in zip(go_category, model_config_paths, model_paths):
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heterodata = torch.load(output)
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device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
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for go_cat, model_config_path, model_path in zip(go_category, model_config_paths, model_paths):
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