Andrew Stirn commited on
Commit
73c24bb
·
1 Parent(s): d41b7db

rounding error

Browse files
Files changed (1) hide show
  1. tiger.py +1 -1
tiger.py CHANGED
@@ -102,7 +102,7 @@ def find_off_targets(guides, batch_size=1000):
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  # find and log off-targets
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  transcripts = one_hot_encode_sequence(df_batch['seq'].values.tolist(), add_context_padding=False)
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  num_mismatches = GUIDE_LEN - tf.nn.conv1d(transcripts, guide_filter, stride=1, padding='SAME')
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- loc_off_targets = tf.where(num_mismatches <= NUM_MISMATCHES).numpy()
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  df_off_targets = pd.concat([df_off_targets, pd.DataFrame({
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  'Guide': np.array(guides)[loc_off_targets[:, 2]],
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  'Isoform': df_batch.index.values[loc_off_targets[:, 0]],
 
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  # find and log off-targets
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  transcripts = one_hot_encode_sequence(df_batch['seq'].values.tolist(), add_context_padding=False)
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  num_mismatches = GUIDE_LEN - tf.nn.conv1d(transcripts, guide_filter, stride=1, padding='SAME')
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+ loc_off_targets = tf.where(tf.round(num_mismatches) <= NUM_MISMATCHES).numpy()
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  df_off_targets = pd.concat([df_off_targets, pd.DataFrame({
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  'Guide': np.array(guides)[loc_off_targets[:, 2]],
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  'Isoform': df_batch.index.values[loc_off_targets[:, 0]],