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Andrew Stirn commited on
Commit
a6ef2fa
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1 Parent(s): 8932957

reference transcripts update

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Files changed (1) hide show
  1. tiger.py +4 -1
tiger.py CHANGED
@@ -27,7 +27,10 @@ TARGET_LEN = CONTEXT_5P + GUIDE_LEN + CONTEXT_3P
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  UNIT_INTERVAL_MAP = 'sigmoid'
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  # reference transcript files
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- REFERENCE_TRANSCRIPTS = ('gencode.v19.pc_transcripts.fa.gz', 'gencode.v19.lncRNA_transcripts.fa.gz')
 
 
 
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  # application configuration
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  BATCH_SIZE_COMPUTE = 500
 
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  UNIT_INTERVAL_MAP = 'sigmoid'
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  # reference transcript files
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+ REFERENCE_TRANSCRIPTS = (
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+ 'gencode_v47_basic_protein_coding_transcripts.fa.gz',
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+ 'gencode_v47_basic_lncRNA_transcripts.fa.gz'
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+ )
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  # application configuration
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  BATCH_SIZE_COMPUTE = 500