Spaces:
Running
on
CPU Upgrade
Running
on
CPU Upgrade
Andrew Stirn
commited on
Commit
·
f606ed7
1
Parent(s):
8134cc8
let's try something
Browse files
app.py
CHANGED
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@@ -12,6 +12,11 @@ from run import run, GUIDE_LEN, NUCLEOTIDE_TOKENS
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# st.write("model prediction: ", returned_x)
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# return csv_x
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# title and instructions
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st.title('TIGER Cas13 Efficacy Prediction')
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@@ -19,7 +24,6 @@ st.session_state['userInput'] = ''
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st.session_state['userInput'] = st.text_input('Enter target transcript (or substring):')
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predictions = pd.DataFrame.from_dict({'Target Site': [''], 'Normalized LFC': [0.0]})
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if len(st.session_state['userInput']) < GUIDE_LEN:
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st.write('Transcript length must be >= 23 bases. It is {:d} chars'.format(len(st.session_state['userInput'])))
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st.write("")
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@@ -27,6 +31,7 @@ elif all([True if nt.upper() in NUCLEOTIDE_TOKENS.keys() else False for nt in st
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st.write('This is your sequence', st.session_state['userInput'])
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predictions = run(st.session_state['userInput'])
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st.write('Model predictions: ', predictions)
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else:
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st.write('only ACTG is allowed')
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st.download_button(label='Download as CVS File', data=predictions.to_csv())
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# st.write("model prediction: ", returned_x)
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# return csv_x
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@st.cache
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def convert_df(df):
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# IMPORTANT: Cache the conversion to prevent computation on every rerun
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return df.to_csv().encode('utf-8')
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# title and instructions
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st.title('TIGER Cas13 Efficacy Prediction')
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st.session_state['userInput'] = st.text_input('Enter target transcript (or substring):')
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if len(st.session_state['userInput']) < GUIDE_LEN:
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st.write('Transcript length must be >= 23 bases. It is {:d} chars'.format(len(st.session_state['userInput'])))
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st.write("")
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st.write('This is your sequence', st.session_state['userInput'])
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predictions = run(st.session_state['userInput'])
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st.write('Model predictions: ', predictions)
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csv = convert_df(predictions)
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st.download_button(label='Download CSV file', data=csv, file_name='tiger_predictions.csv', mime='text/csv')
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else:
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st.write('only ACTG is allowed')
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