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tiger / tiger.py

Commit History

unit-interval tiger model with web tool output transformation

cf79aee

Andrew Stirn commited on May 29, 2023

minor fix

fda1178

Andrew Stirn commited on May 16, 2023

ability to run locally

a2591b6

Andrew Stirn commited on May 6, 2023

prevent empty off target crash

c650039

ericckim03 commited on May 1, 2023

Merge branch 'main' of https://huggingface.co/spaces/Knowles-Lab/tiger into main

56f2fde

ericckim03 commited on May 1, 2023

prevent crash when off target is empty and add option for on target only

99a0d01

ericckim03 commited on May 1, 2023

Merge branch 'main' of https://huggingface.co/spaces/Knowles-Lab/tiger into main

6009ef4

Andrew Stirn commited on Feb 26, 2023

flip guide sequences for biologists

8c452e8

Andrew Stirn commited on Feb 23, 2023

Cleaning up previous fasta files

9f169cd

ericckim03 commited on Feb 23, 2023

enable status bar

89ee386

ericckim03 commited on Feb 16, 2023

missed fix

6216d88

Andrew Stirn commited on Feb 10, 2023

memory leak plugged

0450f78

Andrew Stirn commited on Feb 10, 2023

corrections

6727689

Andrew Stirn commited on Feb 10, 2023

fasta directory optimizations

f311bf4

Andrew Stirn commited on Feb 9, 2023

support for app

89ffb34

Andrew Stirn commited on Feb 9, 2023

find top guides for all transcripts and then scan off-targets simultaneously

f57c1f6

Andrew Stirn commited on Feb 9, 2023

load_transcripts function

d78d0d1

Andrew Stirn commited on Feb 9, 2023

off-targets for gencode.v19.lncRNA_transcripts.fa.gz

e38af10

Andrew Stirn commited on Feb 9, 2023

insufficient target context cases handled

a690e02

Andrew Stirn commited on Jan 6, 2023

back to old test case

cbbf8c9

Andrew Stirn commited on Jan 6, 2023

len = 26 bug

1e16292

Andrew Stirn commited on Jan 6, 2023

no off-target bug

350befe

Andrew Stirn commited on Jan 6, 2023

sorted off-target

6ec253f

Andrew Stirn commited on Jan 6, 2023

cleanup

3a14dfb

Andrew Stirn commited on Jan 6, 2023

cleanup

18c6cc8

Andrew Stirn commited on Jan 6, 2023

rounding error

73c24bb

Andrew Stirn commited on Jan 6, 2023

off-target predictions

de06d10

Andrew Stirn commited on Jan 6, 2023

cleanup

4e66e6b

Andrew Stirn commited on Jan 5, 2023

use zipped fasta file

5fc4e72

Andrew Stirn commited on Jan 5, 2023

off target scanning

1ef81e0

Andrew Stirn commited on Jan 5, 2023

modularized functions

eac7d3f

Andrew Stirn commited on Jan 5, 2023

off-target model with guide sequence utilization

457a981

Andrew Stirn commited on Jan 4, 2023

context len added

59874d6

Andrew Stirn commited on Jan 2, 2023

tensorflow tokenizer

34274e5

Andrew Stirn commited on Dec 11, 2022

cleanup and test cases

814d067

Andrew Stirn commited on Dec 11, 2022