import pandas as pd import streamlit as st from tiger import tiger_exhibit, TARGET_LEN, NUCLEOTIDE_TOKENS @st.cache def convert_df(df): # IMPORTANT: Cache the conversion to prevent computation on every rerun return df.to_csv().encode('utf-8') # title and instructions st.title('TIGER Cas13 Efficacy Prediction') st.session_state['userInput'] = '' st.session_state['userInput'] = st.text_input( label='Enter a target transcript:', # value='ATGCAGGACGCGGAGAACGTGGCGGTGCCCGAGGCGGCCGAGGAGCGCGC', placeholder='Upper or lower case') # input is too short if len(st.session_state['userInput']) < TARGET_LEN: transcript_len = len(st.session_state['userInput']) st.write('Transcript length ({:d}) must be at least {:d} bases.'.format(transcript_len, TARGET_LEN)) # valid input elif all([True if nt.upper() in NUCLEOTIDE_TOKENS.keys() else False for nt in st.session_state['userInput']]): on_target, off_target = tiger_exhibit(pd.DataFrame(dict(id=['ManualEntry'], seq=[st.session_state['userInput']]))) st.write('On-target predictions: ', on_target) st.download_button(label='Download', data=convert_df(on_target), file_name='on_target.csv', mime='text/csv') if len(off_target) > 0: st.write('Off-target predictions: ', off_target) st.download_button(label='Download', data=convert_df(off_target), file_name='off_target.csv', mime='text/csv') else: st.write('We did not find any off-target effects!') # invalid input else: st.write('Nucleotides other than ACGT detected!')