reset output for example
Browse files
app.py
CHANGED
|
@@ -211,6 +211,10 @@ if __name__ == "__main__":
|
|
| 211 |
'''
|
| 212 |
)
|
| 213 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 214 |
# Define Gradio inputs and outputs
|
| 215 |
file_input = gr.File(label="Upload a .h5ad single cell gene expression file or select a default dataset below")
|
| 216 |
# species_input = gr.Dropdown(choices=["human", "mouse"], label="Select species")
|
|
@@ -232,6 +236,10 @@ if __name__ == "__main__":
|
|
| 232 |
image_output = gr.Image(type="numpy", label="UMAP of UCE Embeddings")
|
| 233 |
file_output = gr.File(label="Download embeddings")
|
| 234 |
pred_output = gr.File(label="Download predictions")
|
|
|
|
|
|
|
|
|
|
|
|
|
| 235 |
|
| 236 |
# Add the components and link to the function
|
| 237 |
run_button.click(
|
|
@@ -240,13 +248,10 @@ if __name__ == "__main__":
|
|
| 240 |
outputs=[image_output, file_output, pred_output]
|
| 241 |
)
|
| 242 |
|
| 243 |
-
default_dataset_1_path = hf_hub_download(repo_id="minwoosun/uce-misc", filename="100_pbmcs_proc_subset.h5ad")
|
| 244 |
-
default_dataset_2_path = hf_hub_download(repo_id="minwoosun/uce-misc", filename="1k_pbmcs_proc_subset.h5ad")
|
| 245 |
-
|
| 246 |
examples = gr.Examples(
|
| 247 |
examples=[[default_dataset_1_path, "human", "PBMC 100 cells"],[default_dataset_2_path, "human", "PBMC 1000 cells"]],
|
| 248 |
inputs=[file_input, species_input, default_dataset_input],
|
| 249 |
-
|
| 250 |
fn=main,
|
| 251 |
cache_examples=True
|
| 252 |
)
|
|
|
|
| 211 |
'''
|
| 212 |
)
|
| 213 |
|
| 214 |
+
# download default datasets and assign paths
|
| 215 |
+
default_dataset_1_path = hf_hub_download(repo_id="minwoosun/uce-misc", filename="100_pbmcs_proc_subset.h5ad")
|
| 216 |
+
default_dataset_2_path = hf_hub_download(repo_id="minwoosun/uce-misc", filename="1k_pbmcs_proc_subset.h5ad")
|
| 217 |
+
|
| 218 |
# Define Gradio inputs and outputs
|
| 219 |
file_input = gr.File(label="Upload a .h5ad single cell gene expression file or select a default dataset below")
|
| 220 |
# species_input = gr.Dropdown(choices=["human", "mouse"], label="Select species")
|
|
|
|
| 236 |
image_output = gr.Image(type="numpy", label="UMAP of UCE Embeddings")
|
| 237 |
file_output = gr.File(label="Download embeddings")
|
| 238 |
pred_output = gr.File(label="Download predictions")
|
| 239 |
+
|
| 240 |
+
print(image_output)
|
| 241 |
+
print(file_output)
|
| 242 |
+
print(pred_output)
|
| 243 |
|
| 244 |
# Add the components and link to the function
|
| 245 |
run_button.click(
|
|
|
|
| 248 |
outputs=[image_output, file_output, pred_output]
|
| 249 |
)
|
| 250 |
|
|
|
|
|
|
|
|
|
|
| 251 |
examples = gr.Examples(
|
| 252 |
examples=[[default_dataset_1_path, "human", "PBMC 100 cells"],[default_dataset_2_path, "human", "PBMC 1000 cells"]],
|
| 253 |
inputs=[file_input, species_input, default_dataset_input],
|
| 254 |
+
outputs=[image_output, file_output, pred_output],
|
| 255 |
fn=main,
|
| 256 |
cache_examples=True
|
| 257 |
)
|