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Sonja Topf
commited on
Commit
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e4f4cf0
1
Parent(s):
a78b381
changed column names
Browse files- predict.py +2 -13
predict.py
CHANGED
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@@ -19,18 +19,7 @@ def predict(smiles_list):
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set_seed(0)
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# tox21 targets
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TARGET_NAMES = [
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"NR-AR",
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"NR-AR-LBD",
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"NR-AhR",
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"NR-Aromatase",
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"NR-ER",
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"NR-ER-LBD",
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"NR-PPAR-gamma",
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"SR-ARE",
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"SR-ATAD5",
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"SR-HSE",
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"SR-MMP",
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"SR-p53",
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]
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DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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print(f"Received {len(smiles_list)} SMILES strings")
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@@ -62,7 +51,7 @@ def predict(smiles_list):
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except Exception as e:
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# If SMILES fails, return zeros
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pred_dict = {t: 0.
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predictions[smiles] = pred_dict
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return predictions
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set_seed(0)
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# tox21 targets
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TARGET_NAMES = [
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"NR-AhR","NR-AR","NR-AR-LBD","NR-Aromatase","NR-ER","NR-ER-LBD","NR-PPAR-gamma","SR-ARE","SR-ATAD5","SR-HSE","SR-MMP","SR-p53"
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]
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DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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print(f"Received {len(smiles_list)} SMILES strings")
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except Exception as e:
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# If SMILES fails, return zeros
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pred_dict = {t: 0.5 for t in TARGET_NAMES}
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predictions[smiles] = pred_dict
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return predictions
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