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Update app.py
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app.py
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@@ -72,16 +72,16 @@ def compute_loss(model, inputs):
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return loss
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# Load the data from pickle files (replace with your local paths)
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with open("
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train_sequences = pickle.load(f)
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with open("
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test_sequences = pickle.load(f)
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with open("
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train_labels = pickle.load(f)
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with open("
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test_labels = pickle.load(f)
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# Tokenization
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@@ -104,3 +104,11 @@ flat_train_labels = [label for sublist in train_labels for label in sublist]
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class_weights = compute_class_weight(class_weight='balanced', classes=classes, y=flat_train_labels)
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accelerator = Accelerator()
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class_weights = torch.tensor(class_weights, dtype=torch.float32).to(accelerator.device)
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return loss
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# Load the data from pickle files (replace with your local paths)
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with open("./datasets/train_sequences_chunked_by_family.pkl", "rb") as f:
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train_sequences = pickle.load(f)
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with open("./datasets/test_sequences_chunked_by_family.pkl", "rb") as f:
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test_sequences = pickle.load(f)
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with open("./datasets/train_labels_chunked_by_family.pkl", "rb") as f:
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train_labels = pickle.load(f)
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with open("./datasets/test_labels_chunked_by_family.pkl", "rb") as f:
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test_labels = pickle.load(f)
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# Tokenization
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class_weights = compute_class_weight(class_weight='balanced', classes=classes, y=flat_train_labels)
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accelerator = Accelerator()
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class_weights = torch.tensor(class_weights, dtype=torch.float32).to(accelerator.device)
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dubug_result = class_weights
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demo = gr.Blocks(title="DEMO FOR ESMBind")
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with demo:
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gr.Markdown("# DEMO FOR ESMBind")
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gr.Textbox(dubug_result)
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demo.launch()
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