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CID
int64
19
167M
SID
int64
842k
144M
IUPAC_Name
stringlengths
6
1.03k
PAIN_flag
stringclasses
2 values
50,897,788
109,967,258
1-[6-chloro-4-(1H-pyrrol-2-yl)quinazolin-2-yl]-N-methylmethanamine
No
65,628
144,206,324
4-[5-[bis(2-chloroethyl)amino]-1-methylbenzimidazol-2-yl]butanoic acid
No
3,085,168
144,206,326
N-[(4-amino-2-methylpyrimidin-5-yl)methyl]-N-[(Z)-3-[[(E)-2-[(4-amino-2-methylpyrimidin-5-yl)methyl-formylamino]-5-hydroxypent-2-en-3-yl]disulfanyl]-5-hydroxypent-2-en-2-yl]formamide
No
54,158
144,206,328
2-[[2-(3-bromo-2,4,6-trimethylanilino)-2-oxoethyl]-(carboxymethyl)amino]acetic acid
No
92,140
144,206,329
[(2R,3S,4S)-2,3,4-tri(butanoyloxy)-5-(7,8-dimethyl-2,4-dioxobenzo[g]pteridin-10-yl)pentyl] butanoate
No
54,708,862
144,206,333
magnesium;bis(2-carboxyphenolate);tetrahydrate
No
44,072
144,206,456
sodium 5-[2-chloro-4-(trifluoromethyl)phenoxy]-2-nitrobenzoate
No
71,992
144,206,457
(2S)-2-[[(2S)-1-[(2S)-3-acetylsulfanyl-2-methylpropanoyl]pyrrolidine-2-carbonyl]amino]-3-phenylpropanoic acid
No
71,884
144,206,458
(3S)-4-[[(2S)-1-amino-1-oxo-3-phenylpropan-2-yl]amino]-3-[[(2S)-2-[[(2S)-3-(1H-indol-3-yl)-2-(2-methylbutan-2-yloxycarbonylamino)propanoyl]amino]-4-methylsulfanylbutanoyl]amino]-4-oxobutanoic acid
No
148,121
144,206,459
(2S)-2-[[4-[1-(2,4-diaminopteridin-6-yl)pent-4-yn-2-yl]benzoyl]amino]pentanedioic acid
No
56,840,936
144,206,460
(1S,7Z,10S,16E,21R)-7-ethylidene-4,21-di(propan-2-yl)-2-oxa-12,13-dithia-5,8,20,23-tetrazabicyclo[8.7.6]tricos-16-ene-3,6,9,19,22-pentone
No
11,243,969
144,206,461
(1S,3S,5S)-2-[(2S)-2-amino-2-(3-hydroxy-1-adamantyl)acetyl]-2-azabicyclo[3.1.0]hexane-3-carbonitrile
No
5,281,042
144,206,462
bis[3-[(1R)-6,7-dimethoxy-2-methyl-1-[(3,4,5-trimethoxyphenyl)methyl]-3,4-dihydro-1H-isoquinolin-2-ium-2-yl]propyl] (E)-oct-4-enedioate
No
54,686,904
144,206,463
(4S,4aS,5aR,12aR)-9-[[2-(tert-butylamino)acetyl]amino]-4,7-bis(dimethylamino)-1,10,11,12a-tetrahydroxy-3,12-dioxo-4a,5,5a,6-tetrahydro-4H-tetracene-2-carboxamide
No
23,663,404
144,206,467
sodium 4-[(1R,2R,3aS,8bS)-2-hydroxy-1-[(E,3S)-3-hydroxy-4-methyloct-1-en-6-ynyl]-2,3,3a,8b-tetrahydro-1H-cyclopenta[b][1]benzofuran-5-yl]butanoate
No
115,305
144,206,470
1-[4-(4-amino-6,7-dimethoxyquinazolin-2-yl)-1,4-diazepan-1-yl]butan-1-one;hydrochloride
No
60,196,336
144,206,473
sodium (2S)-2-amino-3-[2-[[(6R,7S)-2-carboxy-7-methoxy-3-[(1-methyltetrazol-5-yl)sulfanylmethyl]-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-7-yl]amino]-2-oxoethyl]sulfanylpropanoate
No
6,918,222
144,206,474
(6R,7R)-7-[[(2E)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-methoxyiminoacetyl]amino]-3-(imidazo[1,2-b]pyridazin-1-ium-1-ylmethyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate;hydrochloride
No
60,196,337
144,206,475
(6R,7R)-7-[[(2E)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-methoxyiminoacetyl]amino]-3-(imidazo[1,2-b]pyridazin-1-ium-1-ylmethyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate;sulfuric acid
No
441,348
144,206,478
2-(diethylamino)ethyl 4-amino-2-chlorobenzoate;hydrochloride
No
214,348
144,206,479
4-[3,5-bis(2-hydroxyphenyl)-1,2,4-triazol-1-yl]benzoic acid
No
3,307
144,206,484
7-(2-chlorophenyl)-4-ethyl-13-methyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.02,6]trideca-2(6),4,7,10,12-pentaene
No
14,257,662
144,206,485
(2S)-N-[(2S)-6-amino-1-[(2-amino-2-oxoethyl)amino]-1-oxohexan-2-yl]-1-[(4R,7S,10S,13S,16S,19R)-19-amino-7-(2-amino-2-oxoethyl)-10-(3-amino-3-oxopropyl)-13,16-dibenzyl-6,9,12,15,18-pentaoxo-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carbonyl]pyrrolidine-2-carboxamide
No
214,356
144,206,487
[2-(2,4-difluorophenyl)-1,3-bis(1,2,4-triazol-1-yl)propan-2-yl] dihydrogen phosphate
No
636,398
144,206,491
[(8S,9S,10R,11S,13S,14S,17R)-11-hydroxy-10,13-dimethyl-3-oxo-17-(2-propanoyloxyacetyl)-2,6,7,8,9,11,12,14,15,16-decahydro-1H-cyclopenta[a]phenanthren-17-yl] butanoate
No
47,462
144,206,494
disodium;2-(2-carboxylatoanilino)-4-chlorobenzoate
No
171,808
144,206,497
(2R,3R,4R,5R)-2-[(1S,2S,3R,4S,6R)-4,6-diamino-3-[(2R,3R,6S)-3-amino-6-(methylaminomethyl)oxan-2-yl]oxy-2-hydroxycyclohexyl]oxy-5-methyl-4-(methylamino)oxane-3,5-diol;sulfuric acid
No
26,383
144,206,498
methyl 6-butyl-4-oxo-7-phenylmethoxy-1H-quinoline-3-carboxylate
No
217,048
144,206,499
5-(diethylamino)-2-[[4-(dimethylsulfamoyl)phenyl]diazenyl]-N-(2-pyridin-1-ium-1-ylethyl)benzenesulfonamide chloride
PAIN
3,083,870
144,206,500
3-(5,5-dioxophenothiazin-10-yl)-N,N,2-trimethylpropan-1-amine;hydrochloride
PAIN
20,055,528
144,206,501
[(2R,3S,4S,5R,6R)-2-[(2R,3S,4S,5S,6S)-2-[2-[[6-amino-2-[3-amino-1-[(2,3-diamino-3-oxopropyl)amino]-3-oxopropyl]-5-methylpyrimidine-4-carbonyl]amino]-3-[[3-hydroxy-5-[[3-hydroxy-1-oxo-1-[2-[4-[4-[3-[[(1S)-1-phenylethyl]amino]propylcarbamoyl]-1,3-thiazol-2-yl]-1,3-thiazol-2-yl]ethylamino]butan-2-yl]amino]-4-methyl-5-oxopentan-2-yl]amino]-1-(1H-imidazol-5-yl)-3-oxopropoxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]oxy-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl] carbamate;sulfuric acid
No
40,703
144,206,502
4-[(2-bromo-4,5-dimethoxyphenyl)methyl]-4-[2-[2-(6,6-dimethyl-2-bicyclo[3.1.1]heptanyl)ethoxy]ethyl]morpholin-4-ium bromide
No
51,051,629
144,206,503
3-aminopropanoyl-[(1S)-1-carboxy-2-(1H-imidazol-5-yl)ethyl]azanide;zinc
No
80,278
144,206,504
dipotassium;2,3-dihydroxypropyl phosphate
No
4,887
144,206,505
N-[4-oxo-2-(2H-tetrazol-5-yl)chromen-8-yl]-4-(4-phenylbutoxy)benzamide
No
443,984
144,206,509
disodium;(2S,5R,6R)-3,3-dimethyl-7-oxo-6-[(2-phenyl-2-sulfonatoacetyl)amino]-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate
No
5,282,199
144,206,513
(5E,9E,13E)-6,10,14,18-tetramethylnonadeca-5,9,13,17-tetraen-2-one
No
60,936
144,206,514
disodium;[(4-chlorophenyl)sulfanyl-[hydroxy(oxido)phosphoryl]methyl]-hydroxyphosphinate
No
54,693,468
144,206,518
zinc bis(2-carboxyphenolate)
No
3,033,690
144,206,519
calcium bis((2S,4S)-1-[(2S)-3-benzoylsulfanyl-2-methylpropanoyl]-4-phenylsulfanylpyrrolidine-2-carboxylate)
No
5,380
144,206,520
butyl 2-oxo-2-[3-(2H-tetrazol-5-yl)anilino]acetate
No
37,497
144,206,521
N-(2,6-dimethylphenyl)-2-[ethyl(propyl)amino]butanamide
No
4,619,591
124,896,725
2-[[4-[ethyl-[(3-sulfonatophenyl)methyl]amino]phenyl]-[4-[ethyl-[(3-sulfonatophenyl)methyl]azaniumylidene]cyclohexa-2,5-dien-1-ylidene]methyl]benzenesulfonate
PAIN
55,283
144,204,405
2-butan-2-yl-4-[4-[4-[4-[[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]piperazin-1-yl]phenyl]-1,2,4-triazol-3-one
PAIN
337,359
144,205,232
(4S)-6-fluorospiro[2,3-dihydrochromene-4,5'-imidazolidine]-2',4'-dione
No
60,490
144,205,233
1-[1-(1-benzothiophen-2-yl)ethyl]-1-hydroxyurea
No
123,631
144,205,236
N-(3-chloro-4-fluorophenyl)-7-methoxy-6-(3-morpholin-4-ylpropoxy)quinazolin-4-amine
No
5,281,078
144,205,239
2-morpholin-4-ylethyl (E)-6-(4-hydroxy-6-methoxy-7-methyl-3-oxo-1H-2-benzofuran-5-yl)-4-methylhex-4-enoate
No
65,940
144,205,308
2-[5-[2-(benzenesulfonamido)ethyl]thiophen-2-yl]oxyacetic acid
No
5,284,442
144,205,309
(E)-7-phenyl-7-pyridin-3-ylhept-6-enoic acid
No
19,592
144,205,311
2-methyl-2-[4-(1,2,3,4-tetrahydronaphthalen-1-yl)phenoxy]propanoic acid
No
44,246,357
85,267,297
1-[2-(4-methoxyphenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,358
85,267,298
1-[2-(2-methylphenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,360
85,267,300
1-[2-(2,4-dichlorophenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,363
85,267,303
1-[2-(2-chlorophenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,369
85,267,309
8-(2-phenylethynyl)-6H-pyrido[4,3-d]pyrimidin-5-one
No
44,246,370
85,267,310
5-chloro-8-(2-phenylethynyl)pyrido[4,3-d]pyrimidine
No
44,246,371
85,267,311
1-[2-(2,3-dimethoxyphenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,373
85,267,313
1-[2-(2,4-dimethoxyphenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,374
85,267,314
1-[2-(2,6-dichlorophenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,376
85,267,316
6-propyl-2-sulfanylidene-1-(2-thiophen-2-ylethyl)-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,378
85,267,318
1-[2-(2,6-dimethoxyphenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,380
85,267,320
6-propyl-1-(2-pyridin-2-ylethyl)-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,381
85,267,321
1-(3-phenylpropyl)-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,383
85,267,323
1,6-dipropyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,385
85,267,325
1-(3,3-dimethylbutyl)-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,387
85,267,327
1-[2-(3,4-dimethoxyphenyl)ethyl]-6-methyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,391
85,267,331
1-[2-(2,3-dimethylphenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,394
85,267,334
1-[2-(2,3-dichlorophenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
17,271,141
85,267,335
6-benzyl-1-[2-(3,4-dimethoxyphenyl)ethyl]-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,397
85,267,338
1-[2-(3,4-dimethoxyphenyl)ethyl]-2-sulfanylidenepteridin-4-one
No
44,246,398
85,267,339
1-[2-(2,5-dimethylphenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,400
85,267,341
5-chloro-8-[2-(3,4-dimethoxyphenyl)ethynyl]pyrido[4,3-d]pyrimidine
No
44,246,401
85,267,342
8-[2-(3,4-dimethoxyphenyl)ethynyl]-6H-pyrido[4,3-d]pyrimidin-5-one
No
44,246,403
85,267,344
1-[(3,4-dimethoxyphenyl)methyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,404
85,267,345
1-[2-(3,4-dimethoxyphenyl)ethyl]-6-propyl-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidine-2,4-dione
No
44,246,405
85,267,346
1-[2-(3,5-dichlorophenyl)ethyl]-6-propyl-2-sulfanylidene-7,8-dihydro-5H-pyrimido[4,5-d]pyrimidin-4-one
No
44,246,406
85,267,347
1-[2-(3,4-dimethoxyphenyl)ethyl]-5,7-dimethyl-2-sulfanylidenepyrido[2,3-d]pyrimidin-4-one
No
17,445,073
85,267,350
2-[(2-thiophen-2-ylquinazolin-4-yl)amino]ethanol
No
44,246,409
85,267,352
4-[4-(3-methylphenyl)sulfonylpiperazin-1-yl]-2-thiophen-2-ylquinazoline
No
44,246,411
85,267,354
4-[4-(3-methoxyphenyl)sulfonylpiperazin-1-yl]-2-thiophen-2-ylquinazoline
No
44,246,412
85,267,355
4-(4-naphthalen-1-ylsulfonylpiperazin-1-yl)-2-thiophen-2-ylquinazoline
No
44,246,413
85,267,356
2,3-dihydro-1,4-benzodioxin-6-yl-[4-(2-thiophen-2-ylquinazolin-4-yl)piperazin-1-yl]methanone
No
44,246,414
85,267,357
2-thiophen-2-yl-4-(4-thiophen-2-ylsulfonylpiperazin-1-yl)quinazoline
No
44,246,415
85,267,358
4-(4-benzylsulfonylpiperazin-1-yl)-2-thiophen-2-ylquinazoline
No
44,246,421
85,267,370
tert-butyl 4-(2-thiophen-2-ylquinazolin-4-yl)piperazine-1-carboxylate
No
44,246,423
85,267,372
tert-butyl N-methyl-N-[2-[methyl-(2-thiophen-2-ylquinazolin-4-yl)amino]ethyl]carbamate
No
44,246,426
85,267,375
methyl 4-[4-(4-methylphenyl)sulfonylpiperazin-1-yl]quinazoline-2-carboxylate
No
44,246,427
85,267,376
4-[4-(2-methoxyphenyl)sulfonylpiperazin-1-yl]-2-thiophen-2-ylquinazoline
No
44,246,429
85,267,378
N,4-dimethyl-N-[2-[methyl-(2-thiophen-2-ylquinazolin-4-yl)amino]ethyl]benzenesulfonamide
No
44,246,430
85,267,379
4-(4-quinolin-3-ylsulfonylpiperazin-1-yl)-2-thiophen-2-ylquinazoline
No
44,246,431
85,267,380
4-[4-(5-chloronaphthalen-2-yl)sulfonylpiperazin-1-yl]-2-thiophen-2-ylquinazoline
No
44,246,433
85,267,382
2-[4-(2-thiophen-2-ylquinazolin-4-yl)piperazin-1-yl]sulfonyl-1,3-thiazole
No
44,246,437
85,267,387
4-[4-(4-methylphenyl)sulfonylpiperazin-1-yl]-2-pyrimidin-5-ylquinazoline
No
44,246,439
85,267,389
N,N'-dimethyl-N'-(2-thiophen-2-ylquinazolin-4-yl)ethane-1,2-diamine
No
44,246,440
85,267,390
N,4-dimethyl-N-[3-[methyl-(2-thiophen-2-ylquinazolin-4-yl)amino]propyl]benzenesulfonamide
No
44,246,441
85,267,391
4-(4-methylsulfonylpiperazin-1-yl)-2-thiophen-2-ylquinazoline
No
44,246,444
85,267,394
4-(4-propan-2-ylsulfonylpiperazin-1-yl)-2-thiophen-2-ylquinazoline
No
44,246,445
85,267,395
4-[4-(4-methylphenyl)sulfonylpiperazin-1-yl]-2-pyridin-4-ylquinazoline
No
44,246,447
85,267,397
2-[4-[4-(4-methylphenyl)sulfonylpiperazin-1-yl]quinazolin-2-yl]-1,3-oxazole
No
End of preview. Expand in Data Studio

Dataset Purpose

The dataset CID_SID_IUPAC_PAIN had been used in the study "Leveraging of the IUPAC Names and Machine Learning for Assisting Drug Discovery and Development, demonstrated on the Case of Human Tyrosyl-DNA Phosphodiesterase 1 (TDP1) Inhibitors" https://doi.org/10.48550/arXiv.2503.05591

Info

This dataset is from samples used in the PubChem AID 686978 bioassay focuced on "qHTS for Inhibitors of Human Tyrosyl-DNA Phosphodiesterase 1 (TDP1): qHTS in Cells in Absence of CPT", https://pubchem.ncbi.nlm.nih.gov/bioassay/686978

Used:

from rdkit import Chem from rdkit.Chem.FilterCatalog import FilterCatalog, FilterCatalogParams

Source code: https://github.com/articlesmli/IUPAC_ML_model_TDP1/blob/main/IUPAC_ML_model/PAIN_IUPAC_checker.ipynb

Dataset Details

Rows: 297,696

  • Column 1: CID (PubChem identifiers)
  • Column 2: SID (PubChem identifiers)
  • Column 3: IUPAC
  • Column 4: PAIN flags
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