AI & ML interests
chemistry, drug discovery, molecular genetics, uncertainty measures
Recent Activity
			Organization Card
		
		Systems Chemical Biology of Infection and Resistance Laboratory
The SCBIR lab is based the Francis Crick Institute in London. We use large-scale genetics and chemical biology to study how pathogenic bacteria infect and evolve resistance to antibiotics.
Ultimately, we aim to enable antimicrobial therapies which exploit key weaknesses in the ability of pathogenic bacteria to infect and evolve resistance to antibiotics.
Our work focuses on these areas (click the links for more information):
- Accelerating discovery of new small molecules with new targets
 - Defining targets for bacterial survival and infection
 
Find out more about our research here!
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	Tutorial - Fitness estimation from pooled growth and NGS
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Inferring competitive fitness from NGS data
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	Predict MICs against bacterial species with uncertainty
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Predict MIC (with uncertainty) against bacterial species
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	LChemME - SMILES canonicalization demo
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SMILES canonicalization with various Large Chemical Models
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	Chemical string format converter
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Trivial batch interconversion of 1D chemical formats.
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	Dynamics of antibiotic discovery and resistance
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	scbirlab/spark-dv-2510-wt
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scbirlab/spark-dv-2503-ypes
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scbirlab/spark-dv-2503-yent
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scbirlab/spark-dv-2503-spne
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scbirlab/spark-dv-2503-saur
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scbirlab/spark-dv-2503-paer
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scbirlab/spark-dv-2503-kpne
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scbirlab/spark-dv-2503-ftul
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scbirlab/spark-dv-2503-ecol
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scbirlab/spark-dv-2503-babo
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	scbirlab/thomas-2018-spark-wt
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scbirlab/thomas-2018-spark-all
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scbirlab/rasmussen-2025-csd
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scbirlab/hudson-2023-dosedo
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scbirlab/cyc-pep-6-12mer-650M-2024
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scbirlab/cyc-pep-6-12mer-70M-2024
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scbirlab/fang-2023-biogen-adme
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scbirlab/steshin-2023-lohi
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scbirlab/lyu-wang-balius-singh-2019-d4
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scbirlab/lyu-wang-balius-singh-2019-ampc
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