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Erva Ulusoy
commited on
Commit
·
0901ef4
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Parent(s):
24c5c6a
upload models
Browse files- data/models/prothgt-config-biological-process.yaml +45 -0
- data/models/prothgt-config-cellular-component.yaml +45 -0
- data/models/prothgt-config-molecular-function.yaml +46 -0
- data/models/prothgt-model-biological-process.pt +3 -0
- data/models/prothgt-model-cellular-component.pt +3 -0
- data/models/prothgt-model-molecular-function.pt +3 -0
data/models/prothgt-config-biological-process.yaml
ADDED
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@@ -0,0 +1,45 @@
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lr:
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desc: null
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value: 0.001
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wd:
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desc: null
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value: 5.0e-05
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epochs:
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desc: null
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value: 100
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tr_batch_size:
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desc: null
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value: 1024
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hidden_channels:
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desc: null
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value:
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- 128
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- - 256
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- 128
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- 64
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- 1
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num_heads:
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desc: null
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value: 8
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num_layers:
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desc: null
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value: 2
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num_neighbors:
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desc: null
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value:
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- 256
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mlp_dropout:
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desc: null
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value: 0.4
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mlp_lr:
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desc: null
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value: 0.005
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mlp_wd:
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desc: null
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value: 0.0001
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neg_sample_ratio:
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desc: null
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value: 100
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pos_weight:
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desc: null
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value: 100
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data/models/prothgt-config-cellular-component.yaml
ADDED
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@@ -0,0 +1,45 @@
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lr:
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desc: null
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value: 0.005
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wd:
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desc: null
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value: 0
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epochs:
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desc: null
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value: 100
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tr_batch_size:
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desc: null
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value: 2048
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hidden_channels:
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desc: null
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value:
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- 32
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- - 64
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- 32
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- 16
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- 1
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num_heads:
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desc: null
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value: 16
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num_layers:
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desc: null
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value: 3
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num_neighbors:
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desc: null
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value:
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- 256
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mlp_dropout:
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desc: null
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value: 0.2
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mlp_lr:
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desc: null
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value: 0.01
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mlp_wd:
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desc: null
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value: 0
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neg_sample_ratio:
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desc: null
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value: 100
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pos_weight:
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desc: null
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value: 100
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data/models/prothgt-config-molecular-function.yaml
ADDED
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@@ -0,0 +1,46 @@
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lr:
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desc: null
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value: 0.005
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wd:
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desc: null
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value: 0
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epochs:
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desc: null
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value: 100
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tr_batch_size:
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desc: null
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value: 512
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hidden_channels:
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desc: null
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value:
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- 32
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- - 64
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- 32
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- 16
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- 8
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- 1
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num_heads:
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desc: null
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value: 2
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num_layers:
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desc: null
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value: 2
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num_neighbors:
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desc: null
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value:
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+
- 32
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| 32 |
+
mlp_dropout:
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desc: null
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value: 0.4
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mlp_lr:
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desc: null
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value: 0.01
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mlp_wd:
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desc: null
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value: 1.0e-05
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+
neg_sample_ratio:
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| 42 |
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desc: null
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| 43 |
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value: 100
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| 44 |
+
pos_weight:
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| 45 |
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desc: null
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| 46 |
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value: 100
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data/models/prothgt-model-biological-process.pt
ADDED
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:fca90b56de173a0da9345b89c9482f4c34b078c711b8fcb56b51129133817502
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size 10245845
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data/models/prothgt-model-cellular-component.pt
ADDED
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@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:64bab7b00d85ebd3091d84765c16744e1dad585559d23d98acea07efd74a8a98
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| 3 |
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size 1463197
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data/models/prothgt-model-molecular-function.pt
ADDED
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@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:b48723f4b5aa0c59962e000a137fe52dfc4afe2c83300ce9fb82d04476776997
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| 3 |
+
size 1487121
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